YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74491958, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.64
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIIDELEWR GAVNQQTDEE GLRKLVEEKK ISLYCGVDPT GDSMHIGHLI PFMMMKRFQL  60
   61 AGHHPVILIG GATGTIGDPS GRQSERQLQT LEVVQHNVDA LTAQMKKLFD FGGNSEVKMV 120
  121 NNYXWTHEIN IIEFLRDYGK NFSINSMLAK DIVASRLDTG ISFTEFTYQI LQAMDFHHLY 180
  181 TKEDVQLQIG GSDQWGNITS GLDLIRKLEG HEAKVFGLTI PLLLKSDGTK FGKSAGGAVW 240
  241 LDPEKTTPFE FYQFWVNTDD RDVIKYLKYF TFLKKERIDE LAAKVEVEPH KREAQKVLAE 300
  301 EMTKFVHGEE ALLQAEKITA ALFSGDIKSL TADEIEQGFK EMPTFHSSKE TKNIVEWLVD 360
  361 LGIEPSRRQA REDINNGAIS MNGEKVTDVG TDVTVENSFD GRFIIIRKGK KNYSLVKLGE 420
  421

Type	Start	End	Confidence
Cytoplasmic	1	59	0.63
Transmembrane Helix	60	77	0.61
Non-Cytoplasmic	78	420	0.99