YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85823287, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTGKDTLHE DQPRDEGYDL DRKLVAGILF AVDREDKAAL TSLMEDLHAA DIADLLEQIN  60
   61 SYDRTRLIRL YGREFDGEIL SELDESIREE VIATLNPSVL ASAVRELETD DVVDLVEDLE 120
  121 EPQQEAILDA LEDSDRVAVE QSLSYPENSA GRLMQREVVM APEHWNVGQA IDYMRESEDL 180
  181 PEQFYHMVLV DPRLRPIGNV TLGRIMGTKR EVPLADLLEE TFQVIPADQD EEDVAYAFNQ 240
  241 YHLISAPVVD GDGRLAGVIT IDDAMAVLDD EHEEDILRLA GVGEESSLAD RVIETTKRRF 300
  301 PWLAVNLVTA VLASLVIAQF EATIAQFVAL AVLMPIVASM GGNAGTQSLT VAVRAMATRD 360
  361 LTGANVWRVI RREVLVGFVN GVIFAVVMGI VGVIWFGSPA LGGVIAAAMV INLVVAGLAG 420
  421 TVIPVLLEKV GVDPALASGA FVTTVTDVVG FFAFLGLAAT LLL

Type	Start	End	Confidence
Cytoplasmic	1	299	0.98
Transmembrane Helix	300	320	0.90
Non-Cytoplasmic	321	328	0.65
Transmembrane Helix	329	353	0.84
Cytoplasmic	354	373	0.94
Transmembrane Helix	374	396	0.94
Non-Cytoplasmic	397	403	0.80
Transmembrane Helix	404	427	0.92
Cytoplasmic	428	435	0.91
Transmembrane Helix	436	459	0.89
Non-Cytoplasmic	460	463	0.74