YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|82407251
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	63	0.93
Transmembrane Helix	64	79	0.84
Non-Cytoplasmic	80	95	0.72
Transmembrane Helix	96	117	0.89
Cytoplasmic	118	140	0.74
Transmembrane Helix	141	156	0.75
Non-Cytoplasmic	157	173	0.62
Transmembrane Helix	174	193	0.93
Cytoplasmic	194	202	0.81
Transmembrane Helix	203	222	0.93
Non-Cytoplasmic	223	249	0.87
Transmembrane Helix	250	270	0.86
Cytoplasmic	271	288	0.96
Transmembrane Helix	289	313	0.87
Non-Cytoplasmic	314	363	0.87
Transmembrane Helix	364	386	0.73
Cytoplasmic	387	405	0.91
Transmembrane Helix	406	424	0.95
Non-Cytoplasmic	425	441	0.80
Transmembrane Helix	442	461	0.89
Cytoplasmic	462	467	0.82
Transmembrane Helix	468	491	0.86
Non-Cytoplasmic	492	507	0.62
Transmembrane Helix	508	531	0.83
Cytoplasmic	532	554	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGDKNENSE LKDSPPDNGV QTSQYNSISP PASPVADEEP FSTYFEDKVP IPESENQIFS  60
   61 FRKLWAFTGP GFLMSIAYLD PGNIESDLQS GAKAGFKLLW VLLLATIIGL LLQRLAARLG 120
  121 VVTGMHLAEV CNRQYPTVPR IILWLMVELA IIGSDMQEVI GCAIALNLLS VGRIPLWAGV 180
  181 LITITDTFVF LFLDKYGLRK LEAFFGFLIT VMAISFGYEY VLVKPDQGEL LKGMFLPYCA 240
  241 GCEPVQLEQA VGIVGAVIMP HNIYLHSALV KSREIDRRNK KEVKEANKYY FIESTIALFI 300
  301 SFLINVFVVA VFAQAFYAKT NIQVNEQCNA TGSPHTDLFP LNNDTLEVDI YKGGVVLGCV 360
  361 FGPAALYIWA VGILAAGQSS TMTGTYSGQF VMEGFLNLRW SRFARVLLTR SVAIVPTLLV 420
  421 AIFQDVQHLT GMNDFLNVLQ SMQLPFALIP ILTFTSLTSI MDDFANGWVW KISGSVVILV 480
  481 VCAINMYFVV VYVTSLNSVL LYVLASLLSI AYLCFVVYLA WHCLIALGVS CLDFSSRVRK 540
  541 RPAVLIEEQS EYDS