YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74492845, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEREVIHMLL GSVPQLDRVA VQLGPFPVYW YGIIIGTGVL LGLWLATREG ERLGIPKDTF  60
   61 VDLVLIAVPI AILFARMYYV IFEWEYYAQN PSQIINIRQG GLAIHGGLIG AVITGILFAK 120
  121 RRGVSFWKLA DIAAPSILLG QAIGRWGNFM NQEAHGDEVT RQFLEGLHLP DFIINQMYIE 180
  181 GVYYHPTFLY ESLWNFVGVI LLLALRKVNL RRGELFFTYL IWYSVGRFFV EGLRTDSLML 240
  241 GPLRIAQVMS IGLVVISIIF IIVRRKMGQA DKRYSEN

Type	Start	End	Confidence
Non-Cytoplasmic	1	27	0.94
Transmembrane Helix	28	47	0.95
Cytoplasmic	48	58	0.94
Transmembrane Helix	59	80	0.93
Non-Cytoplasmic	81	100	0.86
Transmembrane Helix	101	119	0.95
Cytoplasmic	120	125	0.86
Transmembrane Helix	126	145	0.89
Non-Cytoplasmic	146	186	0.90
Transmembrane Helix	187	205	0.92
Cytoplasmic	206	214	0.84
Transmembrane Helix	215	233	0.90
Non-Cytoplasmic	234	242	0.81
Transmembrane Helix	243	263	0.95
Cytoplasmic	264	277	0.95