YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|82400132
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	24	0.98
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	123	0.99
Transmembrane Helix	124	145	0.86
Cytoplasmic	146	161	0.80
Transmembrane Helix	162	182	0.89
Non-Cytoplasmic	183	194	0.88
Transmembrane Helix	195	214	0.93
Cytoplasmic	215	222	0.75
Transmembrane Helix	223	240	0.96
Non-Cytoplasmic	241	247	0.81
Transmembrane Helix	248	269	0.90
Cytoplasmic	270	277	0.83
Transmembrane Helix	278	298	0.91
Non-Cytoplasmic	299	307	0.81
Transmembrane Helix	308	326	0.93
Cytoplasmic	327	342	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARCRLLLFL AALFSIFGLL HASAGDADPI YSACVDQCEK TGCVGDECSQ HCNFTSGGIP  60
   61 VDGPWYLQEP LYLRWKQWDC LSDCRYHCML AREKERKKVG LKPVKYHGKW PFQRVNGIQE 120
  121 PVSVALSALN LAMQFHGWVS FFIFVNYKLP FRPNRKPFYE YTGLWHIYAI FAMNSWFWSV 180
  181 VFHSRDVNLT EKLDYSSAVA LLGFSLILAV LRVFNVTDEA ARVMVSAPLV AFVTTHILYL 240
  241 NCYQLDYGLN MKVCLGMGIL QLILWAVWAG VTRHPSRWKL WVVVIGGALA ALLEIYDFPP 300
  301 YRGFVDAHAL WHATTIPLTY LWWSFVRDDS EFRTTTLIKK AK