YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|228903713, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.92
Transmembrane Helix	21	38	0.98
Non-Cytoplasmic	39	61	0.89
Transmembrane Helix	62	83	0.92
Cytoplasmic	84	100	0.90
Transmembrane Helix	101	123	0.92
Non-Cytoplasmic	124	154	0.96
Transmembrane Helix	155	174	0.93
Cytoplasmic	175	200	0.91
Transmembrane Helix	201	222	0.89
Non-Cytoplasmic	223	238	0.82
Transmembrane Helix	239	261	0.85
Cytoplasmic	262	270	0.81
Transmembrane Helix	271	292	0.88
Non-Cytoplasmic	293	329	0.95
Transmembrane Helix	330	350	0.91
Cytoplasmic	351	358	0.89
Transmembrane Helix	359	380	0.92
Non-Cytoplasmic	381	415	0.93
Transmembrane Helix	416	441	0.83
Cytoplasmic	442	457	0.83
Transmembrane Helix	458	479	0.90
Non-Cytoplasmic	480	484	0.85
Transmembrane Helix	485	505	0.95
Cytoplasmic	506	517	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFTKAKPTK GDLMRKLTKT FIVSLTLCIA FTIWGIIPES IIGKGSLGNV TTAIQTALVS  60
   61 KFGWFYIISV SIILGVSIFL IVSKYGSIRL GKDDDEPDYS YMTWFAMLFS AGMGIGLVFW 120
  121 GVAEPLNHLY APPFGEGATE ESARLALRFS FFHWGLHPWG LYAFVALCIA YFTFRKGKAS 180
  181 TISATVGPLF KGGEHGRIAH SFDVLAVFAT VFGVATSLGL GAKQIAGGVS YLTSIPNSLT 240
  241 TQLVIIAIVT VLFMLSAQTG LDKGIKYLSN TNIIFAFALM IIVLFAGPTN FIMNYFTSTI 300
  301 GSYIQELPSM SFRLSPLDEG GNQWIQSWTI FYWAWWIAWS PFVGTFIARV SRGRTIREFV 360
  361 IGVLLVPTVI GALWFSVFGG TGIHMELFGD AHIFEKIKEM GTEVGLFAMF DQMGSFGSAL 420
  421 SVLAILLIST FFITSADSAT FVLGMLTTHG SLNPPNRIKM IWGIVLAAIA STLLYIGGLE 480
  481 ALQTAAIIAA FPFVFVIFFM MAALFKELQK EGRMKRH