YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74493624, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYNLDLGGDN MRNTNLQAMI ESAILAAFAM VIDILPLSIK ISATGGSISF AMIPIFIIAY  60
   61 RWGFKMAFLG GLIWGLLQIV VGDAIIVTPI QVLIEYFIAF AFIGFAGLFY RPIQKALLTS 120
  121 NENNEEQSNL GSRKDKPSSK PNQGKKVIGY IIVATFIGSL ARYFCHFIAG IIFWGQYAPK 180
  181 GQSAVLYSLI FNGSTMIGSY ILCTVLLIFL FITSPRLFKS ISAYQMNTQK KGA

Type	Start	End	Confidence
Cytoplasmic	1	15	0.62
Transmembrane Helix	16	35	0.83
Non-Cytoplasmic	36	40	0.47
Transmembrane Helix	41	60	0.79
Cytoplasmic	61	66	0.56
Transmembrane Helix	67	87	0.80
Non-Cytoplasmic	88	91	0.72
Transmembrane Helix	92	110	0.92
Cytoplasmic	111	146	0.95
Transmembrane Helix	147	170	0.87
Non-Cytoplasmic	171	192	0.79
Transmembrane Helix	193	213	0.91
Cytoplasmic	214	233	0.91