YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86137780, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.25
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	25	0.97
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	376	0.95
Transmembrane Helix	377	403	0.81
Cytoplasmic	404	404	0.44
Transmembrane Helix	405	420	0.25
Non-Cytoplasmic	421	422	0.38
Transmembrane Helix	423	445	0.86
Cytoplasmic	446	456	0.43
Transmembrane Helix	457	475	0.60
Non-Cytoplasmic	476	503	0.66
Transmembrane Helix	504	526	0.92
Cytoplasmic	527	556	0.66
Transmembrane Helix	557	578	0.92
Non-Cytoplasmic	579	592	0.55
Transmembrane Helix	593	617	0.80
Cytoplasmic	618	628	0.48
Transmembrane Helix	629	646	0.87
Non-Cytoplasmic	647	661	0.50

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRISLLAGLM VLLTSLAALA QQASAQTAVD DPAPMQSLLQ EQSAVILKSS RKTIAPAIAA  60
   61 IAGSELPQAQ AVLQAWQAKA LWMRKSDGLF FRGEKLESKS YRLFDFDSGA VIGEFPKSDL 120
  121 KQIKPNSGIR AMIATALVQF QLSDPDPARR HEALLAIERA PAAALLAPLR ASIETEPDAG 180
  181 IKARKTRIAQ LLTIAHDADE ARRVETINAM SGDLGLDVRA TLNPLVATQL QAFGGAVPEA 240
  241 LNIAREVMPG DDALSRDAAY GLLVGAKLAP PLISKDEIRT TLAGHIEGGK VGGVPIAQLN 300
  301 TDEARARAYA ALVAAERAPA QITEAEVTQS LNDHIFAEVY QEPSQAITTA AEAALTSIDT 360
  361 QVAIGQTVDL TLDALSLASI YFLAAIGLAI TFGVMGVINM AHGEFIMMGA YTGYVVQQVI 420
  421 PNHTVSILVA VPLAFAVTFA AGVAMERLVI RWLYNRPLET LLATFGISIA LQQLAKNIFG 480
  481 TQARPLTAPG WLDGAWIIND VVSISYIRIA IFMLALIFLG VFLFIMRRTR LGLETRAVTQ 540
  541 NRAMAGSMGI NPERVNMLTF GLGSGIAGIA GVAIGLFAKV TSELGSDYIV QSFMTVVVGG 600
  601 VGNIWGTLAG ATMIGFFQKG VEWLNPSNTL AAQTYMILFI IVFIQFRPRG IIALKGRAAG 660
  661 D