YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|227839487, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAWAMNKRD AINHIRQFGG RLDRFRKSVG GSGDGGRNAP KRAKSSPKPV NRKTNVFNEQ  60
   61 VRYAFHGALQ DLKSKPFATF LTVMVIAISL TLPSVCYMVY KNVNQAATQY YPSPQITVYL 120
  121 QKTLDDDAAA GVVAQLQAEQ GVEKVNYLSR EDALGEFRNW SGFGGALDML EENPLPAVAV 180
  181 VIPKLDFQGT ESLNTLRDRI TQINGIDEVR MDDSWFARLA ALTGLVGRVS AMIGVLMVAA 240
  241 VFLVIGNSVR LSIFARRDSI NVQKLIGATD GFILRPFLYG GALLGFSGAL LSLILSEILV 300
  301 LRLSSAVAEV AQVFGTKFDI NGLSFDECLL LLLVCSMIGW VAAWLATVQH LRHFTPE

Type	Start	End	Confidence
Cytoplasmic	1	76	0.74
Transmembrane Helix	77	100	0.66
Non-Cytoplasmic	101	223	0.62
Transmembrane Helix	224	251	0.78
Cytoplasmic	252	271	0.58
Transmembrane Helix	272	296	0.79
Non-Cytoplasmic	297	327	0.51
Transmembrane Helix	328	348	0.91
Cytoplasmic	349	357	0.54