YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67858567, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.47
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAAWAAENP IAAAACNRIP YLMMSYTRWS MCALLGVITL ACFTQACSRK ETSAVNAETK  60
   61 PPQPYGKMPD GTPVELYTLT NANGMQAGII TYGGILTSLT APDKTGKFAD VVLGMDDLPG 120
  121 YLKEKDYFGA LIGRYGNRIG HAQFTLDGQT YKLPDNNNGA TLHGGIKGFD KHVWTAKPVS 180
  181 SPDGQAVELT YVSKDGEEGF PGTLTAKVVY TLTPRNELNI DYTATTDKPT VVNLTNHSYF 240
  241 NLAGPGSGDI LSHEVMIAAD KFTPVDAILI PTGELKDVKG TPFDFTTMTA IGARINQPDE 300
  301 QLKFGRGYDH NWVLNKGAGG MTKAAEVHEP VTGRTMEVWT TEPGLQFYTG NFLDGTNKAK 360
  361 GKSFDLRGAF CMETQHYPDS PNKPAFPSTE LKPGATYHTT TSYRFR

Type	Start	End	Confidence
Cytoplasmic	1	25	0.41
Transmembrane Helix	26	43	0.44
Non-Cytoplasmic	44	406	0.96