YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|194437278, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.93
Transmembrane Helix	8	28	0.95
Non-Cytoplasmic	29	48	0.93
Transmembrane Helix	49	71	0.93
Cytoplasmic	72	84	0.86
Transmembrane Helix	85	106	0.92
Non-Cytoplasmic	107	159	0.86
Transmembrane Helix	160	181	0.87
Cytoplasmic	182	201	0.78
Transmembrane Helix	202	224	0.88
Non-Cytoplasmic	225	234	0.65
Transmembrane Helix	235	258	0.88
Cytoplasmic	259	292	0.75
Transmembrane Helix	293	311	0.65
Non-Cytoplasmic	312	317	0.67
Transmembrane Helix	318	338	0.71
Cytoplasmic	339	353	0.58
Transmembrane Helix	354	376	0.82
Non-Cytoplasmic	377	390	0.70
Transmembrane Helix	391	411	0.81
Cytoplasmic	412	437	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSIKFSLAW QILFAMVLGI LLGSYLHYHS DSRDWLVVNL LSPAGDIFIH LIKMIVVPIV  60
   61 ISTLVVGIAG VGDAKQLGRI GAKTIIYFEV ITTVAIILGI TLANVFQPGA GVDMSQLATV 120
  121 DISKYQSTTE AVQSSSHGIM GTILSLVPTN IVASMAKGEM LPIIFFSVLF GLGLSSLPAT 180
  181 HREPLVTVFR SISETMFKVT HMVMRYAPVG VFALIAVTVA NFGFSSLWPL AKLVLLVHFA 240
  241 ILFFALVVLG IVARLCGLSV WILIRILKDE LILAYSTASS ESVLPRIIEK MEAYGAPASI 300
  301 TSFVVPTGYS FNLDGSTLYQ SIAAIFIAQL YGIDLSIWQE IILVLTLMVT SKGIAGVPGV 360
  361 SFVVLLATLG SVGIPLEGLA FIAGVDRILD MARTALNVVG NALAVLVIAK WEHKFDRKKA 420
  421 LAYEREVLGK FDKTADQ