YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116227825, gi...
Protein type:	Transmembrane
Type Confidence:	0.64
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRWGLAAAFA LCLAAQLLFP GYIGIANNGD FGKVYGWLCL APRGPETNFT YFQPDYSWSA  60
   61 GNYWNSPYHS SQSALAWAAT RMAGATHQGA SFNLRWLGAI HAVLWLGALA MLLAGRRWTA 120
  121 ALAPAVIFTD VCYTAYLNSF YMDAAALTGL LLMTACAVWM SSGGRMSARQ VILFTASALL 180
  181 FVTSKAQHAV WMALPAAFLI ACGVWTKESR RVAWSGAGIV LLAGCWILAT TDQAYRGQAM 240
  241 FNVLFYRLAP RGVDLSSLGV APEEMRYRGM HSYMEKSPAN DRGWTEAFYR RTGFARLVTW 300
  301 YARHPADTFG FLRETLVHGA PEMRPVSLSN FRVEDGRAPG ARTSRFAAWS DLRSALLRKW 360
  361 PWHIVLWYAV FAIGCAVSGS RVAWVGIGVA VLGAGEFAAA SLGDCLDAGR HLFLFHAATD 420
  421 LTVCFAAGWA IQKAMRHRP

Type	Start	End	Confidence
Cytoplasmic	1	6	0.49
Transmembrane Helix	7	26	0.59
Non-Cytoplasmic	27	91	0.77
Transmembrane Helix	92	115	0.79
Cytoplasmic	116	117	0.46
Transmembrane Helix	118	137	0.51
Non-Cytoplasmic	138	143	0.65
Transmembrane Helix	144	163	0.91
Cytoplasmic	164	170	0.73
Transmembrane Helix	171	205	0.60
Non-Cytoplasmic	206	211	0.75
Transmembrane Helix	212	230	0.92
Cytoplasmic	231	363	0.94
Transmembrane Helix	364	385	0.91
Non-Cytoplasmic	386	411	0.79
Transmembrane Helix	412	431	0.95
Cytoplasmic	432	439	0.84