YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86131980, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	37	0.99
Transmembrane Helix	38	60	0.94
Non-Cytoplasmic	61	81	0.92
Transmembrane Helix	82	102	0.96
Cytoplasmic	103	115	0.86
Transmembrane Helix	116	139	0.82
Non-Cytoplasmic	140	159	0.95
Transmembrane Helix	160	182	0.92
Cytoplasmic	183	221	0.96
Transmembrane Helix	222	242	0.94
Non-Cytoplasmic	243	259	0.83
Transmembrane Helix	260	280	0.94
Cytoplasmic	281	297	0.88
Transmembrane Helix	298	321	0.86
Non-Cytoplasmic	322	341	0.90
Transmembrane Helix	342	361	0.94
Cytoplasmic	362	367	0.92
Transmembrane Helix	368	390	0.89
Non-Cytoplasmic	391	409	0.88
Transmembrane Helix	410	431	0.92
Cytoplasmic	432	586	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHYEAPIRR PLVTGDKTYH DVTLDIVAPV EGRANKSWWL VFSIALVAFL WGIGCIIYTV  60
   61 TNGIGSWGLN KTVGWAWDIT NFVWWVGIGH AGTLISAVLL LFRQKWRMAI NRSAEAMTIF 120
  121 SVVQAGLFPI IHMGRPWLAY WVLPIPNQFG SLWVNFNSPL LWDVFAISTY LSVSLVFWWT 180
  181 GLLPDFAMIR DRAVKPFQKK IYSLLSFGWS GRAKDWQRFE EVSLVLAGLA TPLVLSVHTI 240
  241 VSFDFATSVI PGWHTTIFPP YFVAGAVFSG FAMVNTLLII MRKVVSLEAY ITIQHIELMN 300
  301 IVIMITGSIV GVAYITELFM AWYSGVEYEQ YAFLNRATGP YAWSYWAMMT CNVFSPQFMW 360
  361 FPKLRRSIMF SFIISIVVNI GMWFERFVII VTSLHRDYLP SSWTMFSPTF VDIGIFIGTI 420
  421 GFFFVLFLLY ARTFPVIAQA EVKTIMKSSG ERYKKLRESG QSLVGTGADP RTSGGPVKIN 480
  481 LDGAYIAKPQ EVAEGETVIP EDNHGSDSLV SRLGTFDAAT QKADDLKVIN GIGPKMEEKL 540
  541 NELGIYTYEQ VGKMTSVEYN LLDNLTGSFP GRAERDDWAG QANNLK