YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|188495046, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKHAIGIAA LSALSIDDDG WCQLLPAGHF SARDGRPFDV TGGQGWFIDG EIAGRLVEGV  60
   61 RALNQDVLID YEHNQLRKDK GLPPEQLVAA GWFNADEMQW REGEGLFIHP RWTAAAQQRI 120
  121 DDGEFGYLSA VFPYDTATGA VLQIRLAALT NDPGATGMKK LTALAADLPD ILQQENKPMN 180
  181 ETLRKLLARL GVTVPENADI TDEQATAALT ALDTLESNAG KVASLSAELE KAQNAAVDLT 240
  241 KYVPVESYNA LRDELAQATA QSATASLSAV LDKAEQEGRI FKSERTYLEQ LGGQIGVAAL 300
  301 SAQLEKKQPI AALSAMQTTT VQNLSQEKPA VAVLSADEQA AVKALGITEA EYLKMKQEQE 360
  361 K

Type	Start	End	Confidence
Signal Peptide	1	15	0.88
N-region	1	6
H-region	7	12
C-region	13	15
Cleavage Site	15	16
Non-Cytoplasmic	16	361	0.99