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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|77455470
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.90
Topology Confidence: 0.90
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ITIIAVAACL LLLVADAHAQ QQCNWQYGLT TMDIRCSVRA LESGTGTPLD LQVAEAAGRL  60
   61 DLQCSQELLH ASELAPGLFR QLQKLSELRI DACKLQRVPP NAFEGLMSLK RLTLESHNAV 120
  121 WGPGKTLELH GQSFQGLKEL SELHLGDNNI RQLPEGVWCS MPSLQLLNLT QNRIRSAEFL 180
  181 GFSEKLCAGS ALSNANGAVS GGSELQTLDV SFNELRSLPD AWGASRLRRL QTLSLQHNNI 240
  241 STLAPNALAG LSSLRVLNIS YNHLVSLPSE AFAGNKELRE LHLQGNDLYE LPKGLLHRLE 300
  301 QLLVLDLSGN QLTSHHVDNS TFAGLIRLIV LNLSNNALTR IGSKTFKELY FLQILDMRNN 360
  361 SIGHIEEGAF LPLYNLHTLN LAENRLHTLD NRIFNGLYVL TKLTLNNNLV SIVESQAFRN 420
  421 CSDLKELDLS SNQLTEVPEA VQDLSMLKTL DLGENQISEF KNNTFRNLNQ LTGLRLIDNR 480
  481 IGNITVGMFQ DLPRLSVLNL AKNRIQSIER GAFDKNTEIE AIRLDKNFLT DINGIFATLA 540
  541 SLLWLNLSEN HLVWFDYAFI PSNLKWLDIH GNYIEALGNY YKLQEEIRVT TLDASHNRIT 600
  601 EIGAMSVPNS IELLFINNNI IGQIQANTFV DKTRLARVDL YANVLSKISL NALRVAPVSA 660
  661 EKPVPEFYLG GNPFECDCSM EWLQRINNLT TRQHPHVVDL GNIECLMPHS RSAPLRPLAS 720
  721 LSASDFVCKY ESHCPPTCHC CEYEQCECEV ICPGNCSCFH DATWATNIVD CGRQDLAALP 780
  781 NRIPQDVSDL YLDGNNMPEL EVGHLTGRRN LRALYLNASN LMTLQNGSLA QLVNLRVLHL 840
  841 ENNKLTALEG TEFRSLGLLR ELYLHNNMLT HISNATFEPL VSLEVLRLDN NRLSSLPHLQ 900
  901 YRHSLQGLTL GRNAWSCRCQ QLRELAQFVS DNAMVVRDAH DIYCLDAGIK RELELIGNLA 960
  961 NGPDCSDLLD ASASNISSSQ DLAGGYRLPL LAAVLVLIFL VVVLIIVFVF RESVRMWLFA1020
 1021 HYGVRVCEPR FEDAGKLYDA IILHSEKDYE FVCRNIAAEL EHGRPPFRLC IQQRDLPPQA1080
 1081 SHLQLVEGAR ASRKIILVLT RNLLATEWNR IEFRNAFHES LRGLAQKLVI IEETSVSAEA1140
 1141 EDVAELSPYL KSVPSNRLLT CDRYFWEKLR YAIPIELSPR GNNYTLDHHE RFKQPVSPGM1200
 1201 IFRQAPPPPA YYCTEEMEAN YSSATTATPS PRPTRPGGAA RIVDSMPMPM RPPSEHIYHS1260
 1261 IESEYSAYDQ HEALSMIPTG LMHQHQQQQL RLHQQQQQQQ QQRLLQPQFR AMPQQAIPAP1320
 1321 SAPVHLRSGS GLSQASTSTQ STAQASTSAA AAQQQQQQQQ QQQQAAGSEA ANKN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle