YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|150841341, gi...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.32
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFLWSLISF IIVICILVFV HEYGHFWAAR KCGVKVHRFS IGFGKVLWRR NDKFGTEFAV  60
   61 SAVPLGGYVK MLDERNEEVP PELKPQAFNS KTVLQRAFII AAGPLANFLF AVLAYWVIYA 120
  121 VGIPSVKPVI AEIKPNSVAA AAQLRPDSQI LAVDGEDAPD WETINMLLAS KLGNDSVTLT 180
  181 VTPFGENQPR DSVLNLRNWS FNPEKESAFR ALGIQPVSNK ANNVLSNVVD GSPAERAGLK 240
  241 VGDILLQQDG SPVIWSDLVA QIQTGRLISL QVEREGERHT VSFTPMEKDG GYFAGIAPTF 300
  301 EPVNEKYRTE LKYDILDALK KGVEKTVQLS WLTIKVIGKL FTGDLSLNNL SGPISIAQGA 360
  361 GLSASIGLVY YLSFMALISV NLGVMNLFPL PVLDGGHLVF LAAEGIKGKP VSEKVQDFCY 420
  421 RIGAVLLLML TVFALFNDFL RL

Type	Start	End	Confidence
Cytoplasmic	1	4	0.32
Transmembrane Helix	5	29	0.77
Non-Cytoplasmic	30	96	0.45
Transmembrane Helix	97	119	0.85
Cytoplasmic	120	353	0.56
Transmembrane Helix	354	380	0.68
Non-Cytoplasmic	381	381	0.26
Transmembrane Helix	382	401	0.54
Cytoplasmic	402	417	0.49
Transmembrane Helix	418	440	0.86
Non-Cytoplasmic	441	442	0.56