YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|150841384, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVGPFINAG AIVLGGVLGA MLGGRVPERL RTNLTLLFGL CSMAMGISMV AKVHSMPAMV  60
   61 LSVLLGTIIG ELILLESGIN HLAAGAKGIM ERIFPTNGSH HSHEEFLQKF VGLLVLLSFS 120
  121 GTGIFGAMNE GITGDESILI VKAFLDFFTA IIFATTLGIS VSMLFVPQIA VQLILAFSAT 180
  181 FLIPLISAEM RADFAATGGV LMVATGFRIC GIKNFQAGNM LPALFIAMPI SAVWTTFF

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.88
Transmembrane Helix	6	26	0.90
Cytoplasmic	27	33	0.83
Transmembrane Helix	34	54	0.91
Non-Cytoplasmic	55	62	0.66
Transmembrane Helix	63	85	0.82
Cytoplasmic	86	105	0.86
Transmembrane Helix	106	128	0.88
Non-Cytoplasmic	129	137	0.78
Transmembrane Helix	138	161	0.80
Cytoplasmic	162	168	0.49
Transmembrane Helix	169	188	0.84
Non-Cytoplasmic	189	193	0.61
Transmembrane Helix	194	212	0.83
Cytoplasmic	213	217	0.69
Transmembrane Helix	218	237	0.87
Non-Cytoplasmic	238	238	0.78