YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|75431505, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEISTLQVIL VFLVSCVCGA GSILDEFQTH RPLIACTLIG LVLGDMKSGI IVGGSLELLA  60
   61 LGWMNIGAAL APDAALASVI STILVIVGKQ DISTGIAVAI PLAAAGQVLT YVVRAITVGF 120
  121 QHAADKSVQD GNLARLDWLH FGALMLQAMR IAIPALIVAL TAGTDVVQTM LNAIPEVVTT 180
  181 GLKIAGGFIA VVGYAMVINM MRAGHLMPFF YAGFVIAAFT DFNLVALGVL GTVMAVIYIQ 240
  241 IHPKYNKSQQ VVVTAAANND LDNRLD

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.54
Transmembrane Helix	6	24	0.86
Cytoplasmic	25	32	0.53
Transmembrane Helix	33	54	0.71
Non-Cytoplasmic	55	65	0.55
Transmembrane Helix	66	87	0.88
Cytoplasmic	88	94	0.64
Transmembrane Helix	95	115	0.86
Non-Cytoplasmic	116	145	0.70
Transmembrane Helix	146	167	0.82
Cytoplasmic	168	178	0.65
Transmembrane Helix	179	198	0.90
Non-Cytoplasmic	199	213	0.58
Transmembrane Helix	214	239	0.84
Cytoplasmic	240	266	0.78