YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|75430317, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDYFLSLNP VCQAFVAGLF TWGCTVFGSA FVYFFKHVDR KLLDILMGAA AGVMIAASFW  60
   61 SLLNPALDYA QADYGNWAWV PVAIGFIVGG YCLRLLDKFV PHLHLNMPVE KAEGLLEYKK 120
  121 KLSKSTLLFL AITIHNFPEG LAVGVTFGAL ASQTADMSLS LMGAVSLAVG IGLQNIPEGA 180
  181 ALSLPIRAEG NSRRKAFWYG SMSAVVEPVG AVLGAAFVMS VTSILPYALA FAAGAMIFVV 240
  241 VEELIPESQS NGYGDSATMG LMLGFVVMMV LDVALG

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.92
Transmembrane Helix	14	35	0.94
Cytoplasmic	36	41	0.95
Transmembrane Helix	42	63	0.91
Non-Cytoplasmic	64	76	0.84
Transmembrane Helix	77	96	0.94
Cytoplasmic	97	126	0.96
Transmembrane Helix	127	150	0.89
Non-Cytoplasmic	151	156	0.81
Transmembrane Helix	157	176	0.90
Cytoplasmic	177	195	0.87
Transmembrane Helix	196	218	0.92
Non-Cytoplasmic	219	223	0.79
Transmembrane Helix	224	245	0.84
Cytoplasmic	246	252	0.83
Transmembrane Helix	253	275	0.87
Non-Cytoplasmic	276	276	0.93