YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74277340, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEYVPFQTP NLVWDSTIAI YLFLLGISSG AVQLAIAYRR SNKLEKPSEN WVIRSAAFLG  60
   61 TIPTLVGLTL LIFHLARPWT FWKLMFNYQF NSVMSMGVML FQVYMLFMVI WIAVIFKQEI 120
  121 DALIKRFAPK LQFVTTIITK IEWLFSISEV ILFILAAVLG AYTGFLLSAL ISYPMLNNPV 180
  181 LPALFLASGT SSGIAATFLC ILLAGKIKGD SHEVHFIHKF EVPIMVTELG LIVCFFVGLY 240
  241 FGGGQKVVSL YNALTGFWGA VFWIGVMLIG ILIPLVANLF ASDKFKYNAK FIILVSVFDL 300
  301 IGVLCLRYFI LYAGQLTIA

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.96
Transmembrane Helix	17	37	0.95
Cytoplasmic	38	54	0.85
Transmembrane Helix	55	76	0.92
Non-Cytoplasmic	77	93	0.92
Transmembrane Helix	94	116	0.90
Cytoplasmic	117	149	0.89
Transmembrane Helix	150	171	0.88
Non-Cytoplasmic	172	182	0.78
Transmembrane Helix	183	204	0.95
Cytoplasmic	205	221	0.90
Transmembrane Helix	222	243	0.90
Non-Cytoplasmic	244	258	0.85
Transmembrane Helix	259	281	0.90
Cytoplasmic	282	290	0.87
Transmembrane Helix	291	311	0.96
Non-Cytoplasmic	312	319	0.89