YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CCME_ACTSZ
Protein type:	Transmembrane
Type Confidence:	0.65
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPRRKSRLK IVLFILIGVS IASGLVMYAL RSNIDLFYTP SEVVNGKQND ASQKPEVGQR  60
   61 IRVGGMVVAG SVKRDSKTLK VQFDVNDIGP SITVEYEGIL PDLFREGQGI VAQGTLIEPT 120
  121 VLQASEVLAK HDENYVPPEL GEQLEKVHKP MGISNTDLTG ESERDQQEKE SR

Type	Start	End	Confidence
Cytoplasmic	1	10	0.59
Transmembrane Helix	11	30	0.63
Non-Cytoplasmic	31	172	0.99