YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|189347256, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLTSLSFVI PFFNEKGSLP ELIEQLYHAM RDPELHRLFD GSFSFEIILV DDGSTDGSSE  60
   61 LARSMIADRP ELRLISFQRN FGKTAALTAG FRAAQGSVVC TLDADLQDDP ASIRPLVAKL 120
  121 FEGYDLVSGW KKERKDPPGK TVPSRLFNVV TRLFTGIPIH DFNCGLKVYR REVTDRIELH 180
  181 GEMHRYIPVL AGWNGFRITE LPVNHRPRKF GSTKFGTGRF FAGLFDFLAV LFITRYFRRP 240
  241 MHFFGMAGLV SFLSGFTISL YVTLDKLLNH KPVSNRPILF LGILLIILGA QLFSTGLLGE 300
  301 MLSTSAPGAN QFTIRETYNL SEKQADEVRR Q

Type	Start	End	Confidence
Cytoplasmic	1	214	0.94
Transmembrane Helix	215	236	0.90
Non-Cytoplasmic	237	242	0.77
Transmembrane Helix	243	264	0.94
Cytoplasmic	265	277	0.82
Transmembrane Helix	278	298	0.92
Non-Cytoplasmic	299	331	0.92