YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|75242885, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEWIADPSIW AGLITLIVIE LVLGIDNLVF IAILAEKLPP KQRDRARVTG LLLAMLMRLL  60
   61 LLASISWLVT LTQPLFSFRS FTFSARDLIM LFGGFFLLFK ATMELNERLE GKDSNNPTQR 120
  121 KGAKFWGVVT QIVVLDAIFS LDSVITAVGM VDHLLVMMAA VVIAISLMLM ASKPLTQFVN 180
  181 SHPTIVILCL SFLLMIGFSL VAEGFGFVIP KGYLYAAIGF SVMIEALNQL AIFNRRRFLS 240
  241 ANQTLRQRTT EAVMRLLSGQ KEDAELDAET ASMLVDHGNQ QIFNPQERRM IERVLNLNQR 300
  301 TVSSIMTSRH DIEHIDLNAP EDEIRQLLER NQHTRLVVTD GDDAEDLLGV VHVIDLLQQS 360
  361 LRGEPLNLRV LIRQPLVFPE TLPLLPALEQ FRNARTHFAF VVDEFGSVEG IVTLSDVTET 420
  421 IAGNLPNEVE EIDARHDIQK NADGSWTANG HMPLEDLVQY VPLPLDEKRE YHTIAGLLME 480
  481 YLQRIPKPGE EVQVGDYLLK TLQVESHRVQ KVQIVPLHKD GELEYEV

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.94
Transmembrane Helix	9	34	0.86
Cytoplasmic	35	47	0.94
Transmembrane Helix	48	71	0.86
Non-Cytoplasmic	72	82	0.81
Transmembrane Helix	83	102	0.92
Cytoplasmic	103	121	0.95
Transmembrane Helix	122	145	0.83
Non-Cytoplasmic	146	152	0.66
Transmembrane Helix	153	171	0.95
Cytoplasmic	172	183	0.73
Transmembrane Helix	184	202	0.95
Non-Cytoplasmic	203	212	0.68
Transmembrane Helix	213	233	0.91
Cytoplasmic	234	527	0.96