YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LPXK_ECOL5
Protein type:	Transmembrane
Type Confidence:	0.66
Topology Confidence:	0.24
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIEKIWSGES PLWRLLLPLS WLYGLVSGAI RLCYKLKLKR AWRAPIPVVV VGNLTAGGNG  60
   61 KTPVVVWLVE QLQQRGIRVG VVSRGYGGKA ESYPLLLSAD TTTAQAGDEP VLIYQRTGAP 120
  121 VAVSPVRSDA VKAILAQHPD VQIIVTDDGL QHYRLARDVE IVAIDGVRRF GNGWWLPAGP 180
  181 MRERAGRLKS VDAVIVNGGV PRSGEIPMHL LPGQAVNLRT GTRCDVAQLE HVVAIAGIGH 240
  241 PPRFFATLKM CGVQPEKCVP LADHQSLNHA DVSALVSAGQ TLVMTEKDAV KCRAFAEENW 300
  301 WYLPVDAQLS GDEPAKLLAQ LTSLASGH

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.58
Transmembrane Helix	15	34	0.62
Cytoplasmic	35	45	0.53
Transmembrane Helix	46	60	0.24
Non-Cytoplasmic	61	328	0.66