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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|190907578, gi...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.85
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQEYTEDKE VTLTKLSSGR RLLEALLILI VLFAVWLMAA LLSFNPSDPS WSQTAWHEPI  60
   61 HNLGGMPGAW LADTLFFIFG VMAYTIPVII VGGCWFAWRH QSSDEYIDYF AVSLRIIGVL 120
  121 ALILTSCGLA AINADDIWYF ASGGVIGSLL STTLQPLLHS SGGTIALLCV WAAGLTLFTG 180
  181 WSWVTIAEKL GGWILNILTF ASNRTRRDDT WVDEDEYEDD EEYEDENHGK QHESRRARIL 240
  241 RGALARRKRL AEKFINPMGR QTDAALFSGK RMDDEEEITY TARGVAADPD DVLFSGNRAT 300
  301 QPEYDEYDPL LNGAPITEPV AVAAAATTAT QSWAAPVEPV TQTPPVASVD VPPTQPTVAW 360
  361 QPVPGPQTGE PVIAPAPEGY PHQSQYAQPA VQYNEPLQQP VQPQQPYYAP AAEQPVQQPY 420
  421 YAPAAEQPVQ QPYYAPAPEQ PVAGNAWQAE EQQSTFAPQS TYQTEQTYQQ PAAQEPLYQQ 480
  481 PQPVEQQPVV EPEPVVEETK PTRPPLYYFE EVEEKRARER EQLAAWYQPI PEPVKEPEPI 540
  541 KSSLKAPSVA AVPPVEAAAA VSPLASGVKK ATLATGAAAT VAAPVFSLAN SGGPRPQVKE 600
  601 GIGPQLPRPK RIRVPTRREL ASYGIKLPSQ RAAEEKAREA QRNQYDSGDQ YNDDEIDAMQ 660
  661 QDELARQFAQ TQQQRYGEQY QHDVPVNTED ADAAAEAELA RQFAQTQQQR YSGEQPAGAN 720
  721 PFSLDDFEFS PMKALLDDGP HEPLFTPIVE PVQQPQQPVA PQQQYQQPQY QQPQYQQPQQ 780
  781 PVAQQPQYQQ PQQPVAPQQQ YQQPQQPVAQ QPQYQQPQQP VAPQPHDTLL HPLLMRNGDS 840
  841 RPLHKPTTPL PSLDLLTPPP SEVEPVDTFA LEQMARLVEA RLADFRIKAD VVNYSPGPVI 900
  901 TRFELNLAPG VKAARISNLS RDLARSLSTV AVRVVEVIPG KPYVGLELPN KKRQTVYLRE 960
  961 VLDNAKFRDN PSPLTVVLGK DIAGEPVVAD LAKMPHLLVA GTTGSGKSVG VNAMILSMLY1020
 1021 KAQPEDVRFI MIDPKMLELS VYEGIPHLLT EVVTDMKDAA NALRWCVNEM ERRYKLMSAL1080
 1081 GVRNLAGYNE KIAEADRMMR PIPDPYWKPG DSMDAQHPVL KKEPYIVVLV DEFADLMMTV1140
 1141 GKKVEELIAR LAQKARAAGI HLVLATQRPS VDVITGLIKA NIPTRIAFTV SSKIDSRTIL1200
 1201 DQAGAESLLG MGDMLYSGPN STLPVRVHGA FVRDQEVHAV VQDWKARGRP QYVDGITSDS1260
 1261 ESEGGVGGFD GAEELDPLFD QAVQFVTEKR KASISGVQRQ FRIGYNRAAR IIEQMEAQGI1320
 1321 VSEQGHNGNR EVLAPPPFD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle