YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|190907420, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKIALIIGS MIAGGIISAA GFTWFAKEEP PAEKTSTAER KVLFWYDPMY PNTRFDKPGK  60
   61 SPFMDMDLVP KYADEESSAS GVRIDPTQTQ NLGVKTATVT RGPLTFSQSF PANVSYNEYQ 120
  121 YAIVQARAAG FIDKVYPLTV GDKVQKGAPL LDLTIPDWVE AQSEYLLLRE TGGTATQTEG 180
  181 ILERLRLAGM PEADIRSLIA TQKIQTRFTL KAPIDGVITA FDLRAGMNIA KDNVVAKIQG 240
  241 MDPVWVTAAI PESIAWLVKD ASQFTLTVPA RPDKTLTIRK WTLLPGVDAA TRTLQLRLEV 300
  301 DNADEALKPG MNAWLQLNTA SEPMLLIPSQ ALIDTGNEQR VITVDADGRF VPKRVAVFQA 360
  361 SQGVTALRSG LAEGEKVVSS GLFLIDSEAN ISGALERMRS ESATHAH

Type	Start	End	Confidence
Signal Peptide	1	19	0.80
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	407	0.99