YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RODZ_ECO45
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTEATHDQN EALTTGARLR NAREQLGLSQ QAVAERLCLK VSTVRDIEED KAPADLASTF  60
   61 LRGYIRSYAR LVHIPEEELL PGLEKQAPLR AAKVAPMQSF SLGKRRKKRD GWLMTFTWLV 120
  121 LFVVIGLSGA WWWQDHKAQQ EEITTMADQS SAELNNNQSQ SVPLDTSTTT DQAMATTPTS 180
  181 PVDTTATNTQ TPAVTAPAPA VDPQQNAVVP PSQANVDTAA TPAPAATTTP DGAAPLPTDQ 240
  241 AGVTTPAVDP NALVMNFTAD CWLEVTDATG KKLFSGMQRK DGNLNLTGQA PYKLKIGAPA 300
  301 AVQIQYQGKP VDLSRFIRTN QVARLTLNAE QSPAQ

Type	Start	End	Confidence
Cytoplasmic	1	111	0.99
Transmembrane Helix	112	133	0.95
Non-Cytoplasmic	134	335	0.99