YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125974137, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIFSRLFKA RDKPKNSLFG NAYSFFFGGT SSGKAVNERT AMQTTAVYAC VRILAEAIAG  60
   61 LPLHVYRYKE DGGKEKALTH PLYYLLHDEP NPEMTSFVFR ETLMSHLLLW GNAYAQIVRD 120
  121 GSGRVLALYP LLPNKMTVDR APNGELYYTY RRDSDESRVN PKAGLIYLRS DEVLHIPGLG 180
  181 FDGLIGYSPI AMAKNAIGMA IACEEYGASF FANGANPGGV LEHPGVLKDP AKVRESWNAV 240
  241 YQGSANAHRI AVLEEGMKFQ PIGIPPEQAQ FLETRKFQIN EIARIFRVPP HMVGDLEKSS 300
  301 FSNIEQQSLE FVKYTLDPWV VRWEQALQKA LLLPSEKRAY FVKFNVDGLL RGDYASRMNG 360
  361 YAVARQNGWM SANDIRELED MNRIPAELGG DLYLVNGNMT RLADAGTFAG KNNAETEGSK 420
  421 VEQITKTKTG SPLLELDTKR

Type	Start	End	Confidence
Signal Peptide	1	33	0.45
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	440	0.98