YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|117622460, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLIPVVIAAL FLLPPVGFAI VTLVVCMLAA WEWGQLSGFT TRSQRVWLAV LCGLLLALML  60
   61 FLLPEYHRNI HQPLVEISLW ASLGWWIVAL LLVLFYPGSA AIWRNSKTLR IIFGVLTIVP 120
  121 FFWGMLALRA WHYDENHYSG AIWLLYVMIL VWGADSGAYM FGKLFGKHKL APKVSPGKTW 180
  181 QGFIGGLVTA AVISWGYGMW VNLDVAPVTL LICSIVAALA SVLGDLTESM FKREAGIKDS 240
  241 GHLIPGHGGI LDRIDSLTAA VPVFACLLLL VFRTL

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.94
Transmembrane Helix	7	31	0.87
Cytoplasmic	32	45	0.86
Transmembrane Helix	46	64	0.96
Non-Cytoplasmic	65	78	0.84
Transmembrane Helix	79	100	0.87
Cytoplasmic	101	110	0.75
Transmembrane Helix	111	131	0.93
Non-Cytoplasmic	132	140	0.82
Transmembrane Helix	141	162	0.92
Cytoplasmic	163	178	0.91
Transmembrane Helix	179	199	0.92
Non-Cytoplasmic	200	205	0.80
Transmembrane Helix	206	227	0.88
Cytoplasmic	228	253	0.88
Transmembrane Helix	254	272	0.69
Non-Cytoplasmic	273	275	0.54