YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110343556, gi...
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANWLNQLQS LLGQSRSSTS SSADQGLGKL LVPGALGGLA GLLVANKSAR KLLTKYGTNA  60
   61 LLVGGGAVAG TVLWNKYKDK IRAAHQDEPQ FGAQSTPLDE RTERLILALV FAAKSDGHID 120
  121 AKERAAIDQQ LREAGVEEKG RVLIEQAIEQ PLDPQRLATG VRNEEEALEI YFLSCAAIDI 180
  181 DHFMERSYLN ALGDALKIPQ DVREGIERDL EQQKRTLAE

Type	Start	End	Confidence
Cytoplasmic	1	25	0.52
Transmembrane Helix	26	45	0.61
Non-Cytoplasmic	46	55	0.71
Transmembrane Helix	56	75	0.55
Cytoplasmic	76	219	0.54