YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|152031560
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.82
Transmembrane Helix	21	43	0.89
Non-Cytoplasmic	44	52	0.57
Transmembrane Helix	53	72	0.94
Cytoplasmic	73	78	0.65
Transmembrane Helix	79	96	0.86
Non-Cytoplasmic	97	102	0.66
Transmembrane Helix	103	124	0.92
Cytoplasmic	125	130	0.77
Transmembrane Helix	131	150	0.82
Non-Cytoplasmic	151	169	0.88
Transmembrane Helix	170	191	0.90
Cytoplasmic	192	220	0.86
Transmembrane Helix	221	240	0.95
Non-Cytoplasmic	241	249	0.74
Transmembrane Helix	250	269	0.89
Cytoplasmic	270	275	0.71
Transmembrane Helix	276	295	0.82
Non-Cytoplasmic	296	300	0.69
Transmembrane Helix	301	320	0.79
Cytoplasmic	321	328	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSVSTSGSG APKSSFSFGR IWDQYGMLVV FAVLFIACAI FVPNFATFIN MKGLGLAISM  60
   61 SGMVACGMLF CLASGDFDLS VASVIACAGV TTAVVINLTE SLWIGVAAGL LLGVLCGLVN 120
  121 GFVIAKLKIN ALITTLATMQ IVRGLAYIIS DGKAVGIEDE SFFALGYANW FGLPAPIWLT 180
  181 VACLIIFGLL LNKTTFGRNT LAIGGNEEAA RLAGVPVVRT KIIIFVLSGL VSAIAGIILA 240
  241 SRMTSGQPMT SIGYELIVIS ACVLGGVSLK GGIGKISYVV AGILILGTVE NAMNLLNISP 300
  301 FAQYVVRGLI LLAAVIFDRY KQKAKRTV