YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|227886039, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGNIMRIGI PRERLTNETR VAATPKTVEQ LLKLGFTVAV ESGAGQLASF DDKAFVQAGA  60
   61 EIVEGNSVWQ SEIILKVNAP LDDEIALLNP GTTLVSFIWP AQNPELMQKL AERNVTVMAM 120
  121 DSVPRISRAQ SLDALSSMAN IAGYRAIVEA AHEFGRFFTG QITAAGKVPP AKVMVIGAGV 180
  181 AGLAAIGAAN SLGAIVRAFD TRPEVKEQVQ SMGAEFLELD FKEEAGSGDG YAKVMSDAFI 240
  241 KAEMELFAAQ AKEVDIIVTT ALIPGKPAPK LITREMVDSM KAGSVIVDLA AQNGGNCEYT 300
  301 VPGEIFTTEN GVKVIGYTDL PGRLPTQSSQ LYGTNLVNLL KLLCKEKDGN ITVDFDDVVI 360
  361 RGVTVIRAGE ITWPAPPIQV SAQPQAAQKA APEVKTEEKC ACSPWRKYAL MALAIILFGW 420
  421 MASVAPKEFL GHFTVFALAC VVGYYVVWNV SHALHTPLMS VTNAISGIIV VGALLQIGQG 480
  481 GWVSFLSFIA VLIASINIFG GFTVTQRMLK MFRKN

Type	Start	End	Confidence
Cytoplasmic	1	133	0.71
Transmembrane Helix	134	148	0.42
Non-Cytoplasmic	149	172	0.65
Transmembrane Helix	173	196	0.67
Cytoplasmic	197	404	0.98
Transmembrane Helix	405	424	0.89
Non-Cytoplasmic	425	428	0.89
Transmembrane Helix	429	448	0.93
Cytoplasmic	449	457	0.76
Transmembrane Helix	458	477	0.93
Non-Cytoplasmic	478	484	0.72
Transmembrane Helix	485	505	0.94
Cytoplasmic	506	515	0.92