YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85716396, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPITILDLVL LAVMLISGLL AMIRGFMREI LSIASWGIAA LATLYSFQKL LPFAKTYINS  60
   61 ETLAAAAVIG GVFIGTLIVI SLITTRISDM VLDSRIGALD RTLGFLFGLA RGLLIVVVAF 120
  121 LFFAWLVPDK QRPDWVTGAK SLTVLNSTGA WLQSLLPDDP ENTILNRLKK NKPEEEQPDA 180
  181 ESASPGSDGY SKPARDSLQK LIDGKPAEQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.62
Transmembrane Helix	5	26	0.84
Cytoplasmic	27	31	0.54
Transmembrane Helix	32	51	0.84
Non-Cytoplasmic	52	62	0.62
Transmembrane Helix	63	85	0.93
Cytoplasmic	86	102	0.69
Transmembrane Helix	103	127	0.89
Non-Cytoplasmic	128	209	0.71