YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85716038, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTATSQATA KHILSLPNIL TYARIAAIPV VVGCVYAQSI MDGPLQLRWV ALGVFVAAAV  60
   61 TDFFDGYYAR IWDQQSALGK MLDPIADKLL VASCLLMLAA DGIIHGWTLW AAIVILCREI 120
  121 LVSGLREYLA ALRVSVPVTK LAKWKTTVQL VAIGFLLAGE AGDLVFPFVT QIGLLLLWIS 180
  181 AILTIYTGWD YFHAGIHHLM EEDEK

Type	Start	End	Confidence
Cytoplasmic	1	19	0.87
Transmembrane Helix	20	40	0.92
Non-Cytoplasmic	41	46	0.77
Transmembrane Helix	47	68	0.87
Cytoplasmic	69	84	0.76
Transmembrane Helix	85	105	0.76
Non-Cytoplasmic	106	108	0.46
Transmembrane Helix	109	129	0.59
Cytoplasmic	130	145	0.56
Transmembrane Helix	146	162	0.65
Non-Cytoplasmic	163	167	0.56
Transmembrane Helix	168	192	0.80
Cytoplasmic	193	205	0.85