YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85715111, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	26	0.96
Transmembrane Helix	27	48	0.81
Non-Cytoplasmic	49	78	0.85
Transmembrane Helix	79	102	0.85
Cytoplasmic	103	122	0.95
Transmembrane Helix	123	146	0.86
Non-Cytoplasmic	147	153	0.87
Transmembrane Helix	154	175	0.94
Cytoplasmic	176	183	0.86
Transmembrane Helix	184	205	0.91
Non-Cytoplasmic	206	214	0.85
Transmembrane Helix	215	237	0.94
Cytoplasmic	238	273	0.93
Transmembrane Helix	274	296	0.84
Non-Cytoplasmic	297	316	0.86
Transmembrane Helix	317	337	0.93
Cytoplasmic	338	376	0.88
Transmembrane Helix	377	397	0.84
Non-Cytoplasmic	398	403	0.65
Transmembrane Helix	404	425	0.80
Cytoplasmic	426	443	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSAAEQLAA NLNFSAFAKA DELKKRIWFT LGALLVYRLG TYIPLPGIDP TVWQKVFNSQ  60
   61 AGGILGMFNM FSGGGIDRMA IFALNIMPYI SAAIILQLLT SVSPKLEALK KEGEAGRKVI 120
  121 NQYTRYLTVV LAFFQSYGIA VGLQGAGNVV TNPGMFFLVS TAITLTGGTM FLMWLGEQIT 180
  181 SRGIGNGISL IIMAGIVAEL PSALANMLEL GRQGALSTGI ILIVLIMVVA VIAFIVFMER 240
  241 AQRRLLIQYP KRQVGNKMFD GQSSHLPLKL NTSGVIPPIF ASSLLLLPTT VANFNAGSGP 300
  301 EWFQWINTQL GHGRPLFLVL YIALIVFFTF FYTAIVFNPT ETADNLKKHG GFIPGIRPGE 360
  361 RTAEYIDYVL SRITVPGAVY LAVVCLIPEI LISYAAVPFY FGGTSLLIVV SVTMDTVSQV 420
  421 QGYLLAHQYE GLIKKSKLRG RRR