YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|191167128, gi...
Protein type:	Transmembrane
Type Confidence:	0.72
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPLLTDSRR QALRSASHWY AVLSSERVSP QQEARWQQWY EQDQDNQWAW QQVENLRNQL  60
   61 GGVPGDVASR ALHDTRLTRR HVMKGLLLLL GAGGGWQLWQ SETSEGLRAD YRTAKGTVSR 120
  121 QQLEDGSLLT LNTQSAADVR FDAHQRTVRL WYGEIAITTA KDALQRPFRV LTRQGQLTAL 180
  181 GTEFTVRQLD NFTQLDVQQH AVEVLLASAP AQKRIVNAGE SLQFSASEFG AVKPLDDEST 240
  241 SWTKDILSFS DKPLGEVIAT LTRYRNGVLR CDPAVAGLRL SGTFPLKNTD AILNVIAQTL 300
  301 PVKIQSITRY WINISPL

Type	Start	End	Confidence
Cytoplasmic	1	79	0.72
Transmembrane Helix	80	99	0.66
Non-Cytoplasmic	100	317	0.99