YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|75229459
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTLFGAVLL LLIPIMLIRQ VIVERADYRS DVEDAIRQST SGPQKLVGPL IAIPVTELYT  60
   61 VQEEDKTVER KRSFIHFWLP ESLMVDGNQN VEERKIGIYT GQVWHSDLTL KADFDVSRLS 120
  121 ELDAPNITFG KPFIVISVGD ARGIGVVKAP EVNGMALTIE PGTGLEQGGQ GVHIPLPEGD 180
  181 WRKQNLKLNM ALNLSGTGDL SVVPAGRNSE MTLTSNWPHP SFLGDFLPAK REVSESGFQA 240
  241 QWQSSWFANN LGERFASGND TGWENFPAFS VAVTTPADQY QLTDRATKYA ILLIALTFMA 300
  301 FFVFETLTAQ RLHPMQYLLV GLSLVMFYLL LLALSEHTGF TGAWIIASLI GALMNGIYLQ 360
  361 AVLKGWRNSM LFTLALLLLD GVMWGLLNSA DSALLLGTSV LVVALAGMMF VTRNIDWYAF 420
  421 SLPKMKASKE VTTDDELRIW K

Type	Start	End	Confidence
Signal Peptide	1	20	0.95
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	288	0.98
Transmembrane Helix	289	308	0.92
Cytoplasmic	309	314	0.87
Transmembrane Helix	315	334	0.93
Non-Cytoplasmic	335	339	0.84
Transmembrane Helix	340	359	0.93
Cytoplasmic	360	368	0.73
Transmembrane Helix	369	387	0.94
Non-Cytoplasmic	388	393	0.80
Transmembrane Helix	394	415	0.91
Cytoplasmic	416	441	0.96