YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|190901283, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFASLIERQ RIRLLLALLF GACGTLAFSP YDVWPAAIIS LMGLQALTFN RRPLQSAAIG  60
   61 FCWGFGLFGS GINWVYVSIA TFGGMPGPVN IFLVVLLAAY LSLYTGLFAG VLSRLWPKTT 120
  121 WLRVAIAAPS LWQVTEFLRG WVLTGFPWLQ FGYSQIDGPL KGLAPIMGVE AINFLLMMVS 180
  181 GLLALALVKR NWRPLVVAVV LFALPFPLRY IQWFTPQPEK TIQVSMVQGD IPQSLKWDGD 240
  241 QLLNTLKIYY NATAPLMGKS SLIIWPESAI TDLEINQQPF LKALDGELRD KGSSLVTGIV 300
  301 DARLNKQNRY DTYNTIITLG KGAPYSYESA DRYNKNHLVP FGEFVPLESI LRPLAPFFDL 360
  361 PMSSFSRGPY IQPPLSVNGI ELTAAICYEI ILGEQVRDNF RPDTDYLLTI SNDAWFGKSI 420
  421 GPWQHFQMAR MRALELARPL LRSTNNGITA VIGPQGEVQA MIPQFTREVL TTNVTPTTGL 480
  481 TPYARTGNWP LWVLTALFGF AAVLMSLRAR KR

Type	Start	End	Confidence
Cytoplasmic	1	11	0.89
Transmembrane Helix	12	28	0.96
Non-Cytoplasmic	29	32	0.73
Transmembrane Helix	33	50	0.87
Cytoplasmic	51	58	0.77
Transmembrane Helix	59	80	0.91
Non-Cytoplasmic	81	90	0.73
Transmembrane Helix	91	112	0.92
Cytoplasmic	113	120	0.78
Transmembrane Helix	121	143	0.76
Non-Cytoplasmic	144	162	0.81
Transmembrane Helix	163	186	0.88
Cytoplasmic	187	194	0.74
Transmembrane Helix	195	213	0.91
Non-Cytoplasmic	214	488	0.96
Transmembrane Helix	489	507	0.95
Cytoplasmic	508	512	0.79