YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85694935, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANESGKVES QSSQKRRGIY LLPNLFTTAG LFSGFYAIIA SMNERYVEAA VAIFIAMIFD  60
   61 GLDGRVARMT QTESDFGAEY DSMADIVSFG MAPALVMYNY ALADLGKLGW LAAFIFVAGG 120
  121 ALRLARFNTN IGSADKRYFQ GLAIPSAAAV VSGLVWVGTE YGISGNDLGG FAAIVTIVAG 180
  181 LLMVTNFRYH SFKDVDWKGK VSFVVILVIV LAFVIVATQP SLVLFGIFFL YALSGPVLTI 240
  241 RSVNKLKLEH VVGDNEQDDA EFKDEKQGKS SNNNQNEQ

Type	Start	End	Confidence
Cytoplasmic	1	19	0.95
Transmembrane Helix	20	40	0.96
Non-Cytoplasmic	41	45	0.91
Transmembrane Helix	46	67	0.82
Cytoplasmic	68	81	0.84
Transmembrane Helix	82	102	0.85
Non-Cytoplasmic	103	107	0.83
Transmembrane Helix	108	127	0.93
Cytoplasmic	128	137	0.94
Transmembrane Helix	138	159	0.92
Non-Cytoplasmic	160	167	0.85
Transmembrane Helix	168	189	0.91
Cytoplasmic	190	198	0.85
Transmembrane Helix	199	217	0.91
Non-Cytoplasmic	218	221	0.61
Transmembrane Helix	222	240	0.78
Cytoplasmic	241	278	0.70