YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125974589, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNYIWFVML VTGFVVGIMN GRVDEITQAV VDSSKNAVEI SIGLLGIMCL WTGLMEVAEK  60
   61 SGIVRSIAKT VRPVMEFLFP GIPKGHPASG AIVMNLVANF LGLGNAATPL GIKAMNELQK 120
  121 LNPDKDTATD EMSMFLVLNT SCIQFIPATI IALRASFGSK NPAEVIGTIW VASICAFITG 180
  181 IVAAKTLSYF FKGKSQAKKR FENKTGRGRA

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.71
Transmembrane Helix	5	23	0.88
Cytoplasmic	24	35	0.74
Transmembrane Helix	36	55	0.85
Non-Cytoplasmic	56	87	0.79
Transmembrane Helix	88	112	0.76
Cytoplasmic	113	134	0.86
Transmembrane Helix	135	155	0.90
Non-Cytoplasmic	156	165	0.82
Transmembrane Helix	166	191	0.87
Cytoplasmic	192	210	0.95