YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67874822, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLATIIGLI LGVICVIWSI MLDGSLLSFW DFASVIITLG GGLCATLVSC KITEFAKIMK  60
   61 VTVKVLRGKE PRPQDTIRML VELSLKARRE GLLSLESEQE NIDNDFLKQS LQLVVDGVEP 120
  121 EVIVDTMDLE LENMKARHDK GVSLFKTMAA QFPAWGMIGT LIGLIKLLES LDDPSKIGSA 180
  181 MAVALVTTFY GSILANLICN PIATKLAEKS KEEIQEKKMI IEGVLSIQAG ENPRILEHKL 240
  241 KTFLSPKQKL EYDKMANQAA EERRSERGER SEKGREAAV

Type	Start	End	Confidence
Cytoplasmic	1	4	0.86
Transmembrane Helix	5	22	0.93
Non-Cytoplasmic	23	31	0.60
Transmembrane Helix	32	50	0.94
Cytoplasmic	51	143	0.97
Transmembrane Helix	144	165	0.88
Non-Cytoplasmic	166	176	0.81
Transmembrane Helix	177	199	0.86
Cytoplasmic	200	279	0.95