YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|75214431
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RCLNCNGVQL MREKGMNRSE SGQLGFSVLL FQDLAVIPAL ALVPLLAGSA DEHFDWMKIG  60
   61 MKVLAFVGML IGGRYLLRPV FRFIAASGVR EVFTAATLLL VLGSALFMDA LGLSMALGTF 120
  121 IAGVLLAESE YRHELETAID PFKGLLLGLF FISVGMSLNL GVLYTHLLWV VISVVVLVAV 180
  181 KILVLYLLAR LYGVRSSERM QFAGVLSQGG EFAFVLFSTA SSQRLFQGDQ MALLLVTVTL 240
  241 SMMTTPLLMK LVDKWLSRQF NGPEEEDEKP WVNDDKPQVI VVGFGRFGQV IGRLLMANKM 300
  301 RITVLERDIS AVNLMRKYGY KVYYGDATQV DLLRSAGAEA AESIVITCNE PEDTMKLVEI 360
  361 CQQHFPHLHI LARARGRVEA HELLQAGVTQ FSRETFSSAL ELGRKTLVTL GMHPHQAQRA 420
  421 QLHFRRLDMR MLRELIPMHA DTVQISRARE ARRELEEIFQ REMQQERRQL DGWDEFE

Type	Start	End	Confidence
Cytoplasmic	1	23	0.85
Transmembrane Helix	24	47	0.85
Non-Cytoplasmic	48	58	0.71
Transmembrane Helix	59	77	0.92
Cytoplasmic	78	86	0.68
Transmembrane Helix	87	107	0.78
Non-Cytoplasmic	108	109	0.54
Transmembrane Helix	110	129	0.81
Cytoplasmic	130	141	0.73
Transmembrane Helix	142	163	0.80
Non-Cytoplasmic	164	167	0.63
Transmembrane Helix	168	189	0.91
Cytoplasmic	190	201	0.77
Transmembrane Helix	202	221	0.86
Non-Cytoplasmic	222	230	0.71
Transmembrane Helix	231	252	0.83
Cytoplasmic	253	477	0.85