YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|75212178
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	17	0.95
Transmembrane Helix	18	37	0.96
Non-Cytoplasmic	38	55	0.92
Transmembrane Helix	56	77	0.92
Cytoplasmic	78	94	0.92
Transmembrane Helix	95	117	0.91
Non-Cytoplasmic	118	149	0.95
Transmembrane Helix	150	172	0.89
Cytoplasmic	173	192	0.91
Transmembrane Helix	193	214	0.91
Non-Cytoplasmic	215	233	0.88
Transmembrane Helix	234	255	0.92
Cytoplasmic	256	264	0.89
Transmembrane Helix	265	287	0.91
Non-Cytoplasmic	288	324	0.93
Transmembrane Helix	325	344	0.91
Cytoplasmic	345	352	0.87
Transmembrane Helix	353	372	0.91
Non-Cytoplasmic	373	408	0.86
Transmembrane Helix	409	429	0.88
Cytoplasmic	430	452	0.78
Transmembrane Helix	453	472	0.93
Non-Cytoplasmic	473	478	0.71
Transmembrane Helix	479	498	0.95
Cytoplasmic	499	665	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSENDTIPKK STSQINKAVF FTSALLIFLL VAFAAVFPDV ADKNFKLLQQ QIFTNASWFY  60
   61 ILAVALILLS VTFLGLSRYG DIKLGPDHAQ PDFSYHSWFA MLFSAGMGIG LMFFGVAEPV 120
  121 MHYLSPPVGT PETVAAAKEA MRLTFFHWGL HAWAIYAIVA LILAFFSYRH GLPLTLRSAL 180
  181 YPIIGDRIYG PVGHAVDIFA VIGTVFGVAT SLGYGVLQVN AGLNHLFGVP INETVQVILI 240
  241 VVITGLATIS VVSGLDKGIR ILSELNLGLA LLLLALVLCL GPTVLLLKSF VENTGGYLSE 300
  301 LVSKTFNLYA YEPKSSNWLG GWTLLYWGWW LSWSPFVGMF IARVSRGRTI REFVTGVLFV 360
  361 PAGFTLMWMT VFGNSAIYLI MNQGATDLAN TVQQDVALAL FNFLEHFPFS SVLSFIAMAM 420
  421 VIVFFVTSAD SGAMVVDTLA SGGVANTPVW QRIFWASLMG IVAIALLLAG GLSALQTVTI 480
  481 ASALPFSVIL LISIYGLLKA LRRDLTKRES LSMATIAPTA ARNPIPWQRR LRNIAYLPKR 540
  541 SLVKRFMDDV IQPAMTLVQE ELNKQGTISH ISDAVDDRIR LEVDLGNELN FIYEVRLRGY 600
  601 ISPTFALAAM DNDEQQTEQH RYYRAEVYLK EGGQNYDVMG WNQEQLINDI LDQYEKHLHF 660
  661 LHLVR