YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|75210668, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	99	0.96
Transmembrane Helix	100	121	0.88
Non-Cytoplasmic	122	139	0.76
Transmembrane Helix	140	161	0.91
Cytoplasmic	162	168	0.78
Transmembrane Helix	169	190	0.88
Non-Cytoplasmic	191	207	0.86
Transmembrane Helix	208	229	0.90
Cytoplasmic	230	244	0.87
Transmembrane Helix	245	266	0.90
Non-Cytoplasmic	267	283	0.67
Transmembrane Helix	284	310	0.78
Cytoplasmic	311	318	0.54
Transmembrane Helix	319	346	0.74
Non-Cytoplasmic	347	353	0.63
Transmembrane Helix	354	375	0.79
Cytoplasmic	376	380	0.69
Transmembrane Helix	381	402	0.88
Non-Cytoplasmic	403	425	0.71
Transmembrane Helix	426	452	0.85
Cytoplasmic	453	625	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTELARKIVA GVGGADNIVS LMHCATRLRF KLKDESKAQA EVLKKTPGII MVVESGGQFQ  60
   61 VVIGNHVADV FLAVNSVAGL DEKAQQAPEN DDKSNLLNRF VYVISGIFTP LIGLMAATGI 120
  121 LKGMLALALT FQWTTEQSGT YLILFSASDA LFWFFPIILG YTAGKRFGGN PFTAMVIGGA 180
  181 LVHPLILTAF ENGQKADELG LDFLGIPVTL LNYSSSVIPI IFSAWLCSIL ERRLNAWLPS 240
  241 AIKNFFTPLL CLMVITPVTF LLVGPLSTWI SEMIAAGYLW LYQAVPAFAG AVMGGFWQIF 300
  301 VMFGLHWGLV PLCINNFTVL GYDTMIPLLM PAIMAQVGAA LGVFLCERDA QKKVVAGSAA 360
  361 LTGLFGITEP AVYGVNLPRK YPFVIACISG ALGATIIGYA QTKVYSFGLP SIFTFMQTIP 420
  421 STGIDFTVWA SVIGGVIAIG CAFVGTVMLH FITAKRQPAQ GAPQEKTPEV ITPPEQGGIC 480
  481 SPMTGEIVPL IHVADTTFAS GLLGKGIAIL PSVGEVRSPV AGRIASLFAT LHAIGIESDD 540
  541 GVEILIHVGI DTVKLDGKFF SAHVNVGDKV NTGDRLISFD IPAIREAGFD LTTPVLISNS 600
  601 DDFTDVLPHG TAQISAGEPL LSIIR