YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|75196117
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVVTHTAVV QVLIHMEWIA DPSIWVGLVT LVIIELVLGI DNLVFIAILA EKLPPAHRDR  60
   61 ARITGLMLAM VMRLLLLTSI SWLVTLTQPL FSFRSFTFSA RDLIMLFGGF FLLFKATIEL 120
  121 SERLEGKDSN NPTQRKGAKF WGVVTQIVVL DAIFSLDSVV TAIGMVDHLL VMMAAVVIAI 180
  181 SLMLMASKPL TQFVNSHPTI VILCLSFLLM IGFSLVAEGF GFVIPKGYLY AAIGFSVMIE 240
  241 AFNQLAIFNR RRFLSANQTL RQRTTEAVMR LLSGQKEDAE LDAETASMLV DHGNQQIFNP 300
  301 QERRMIERVL NLNQRTVSSI MTSRHDIEHI DLNAPEDEIR QLLERNQHTR LVVTDGDDAE 360
  361 DLLGVVHVID LLQQSLRGEP LNLRVLIRQP LVFPETLPLL PALEQFRNAR THFAFVVDEF 420
  421 GSVEGIVTLS DVTETIAGNL PNEVEEIDAR HDIQKNADGS WTANGHMPLE DLVQYVPLPL 480
  481 DEKREYHTIA GLLMEYLQRI PKPGEEVQVG DYLLKTLQVE SHRVQKVQII PLRKDGEMEY 540
  541 EV

Type	Start	End	Confidence
Non-Cytoplasmic	1	23	0.94
Transmembrane Helix	24	49	0.86
Cytoplasmic	50	62	0.94
Transmembrane Helix	63	86	0.86
Non-Cytoplasmic	87	97	0.81
Transmembrane Helix	98	118	0.90
Cytoplasmic	119	136	0.96
Transmembrane Helix	137	156	0.89
Non-Cytoplasmic	157	167	0.59
Transmembrane Helix	168	186	0.94
Cytoplasmic	187	198	0.73
Transmembrane Helix	199	217	0.95
Non-Cytoplasmic	218	227	0.68
Transmembrane Helix	228	248	0.91
Cytoplasmic	249	542	0.96