YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|194439578, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLAGSSLLT LLDDIATLLD DISVMGKLAA KKTAGVLGDD LSLNAQQVSG VRANRELPVV  60
   61 WGVAKGSLIN KVILVPLALI ISAFIPWAIT PLLMIGGAFL CFEGVEKVLH MLEARKHKED 120
  121 PAQSQQRLEK LAAQDPLKFE KDKIKGAIRT DFILSAEIVA ITLGIVAEAP LLNQVLVLSG 180
  181 IALVVTVGVY GLVGVIVKID DLGYWLAEKS SALMQALGKG LLIIAPWLMK ALSIVGTLAM 240
  241 FLVGGGIVVH GIAPLHHAIE HFAGQQSAVV AMILPTVLNL ILGFIIGGIV VLGVKAVAKI 300
  301 RGQAH

Type	Start	End	Confidence
Cytoplasmic	1	66	0.72
Transmembrane Helix	67	81	0.70
Non-Cytoplasmic	82	82	0.32
Transmembrane Helix	83	105	0.72
Cytoplasmic	106	147	0.70
Transmembrane Helix	148	167	0.68
Non-Cytoplasmic	168	174	0.63
Transmembrane Helix	175	197	0.89
Cytoplasmic	198	230	0.76
Transmembrane Helix	231	253	0.85
Non-Cytoplasmic	254	270	0.84
Transmembrane Helix	271	294	0.90
Cytoplasmic	295	305	0.86