YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|75189638
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.86
Transmembrane Helix	17	38	0.88
Cytoplasmic	39	72	0.89
Transmembrane Helix	73	94	0.84
Non-Cytoplasmic	95	101	0.79
Transmembrane Helix	102	123	0.95
Cytoplasmic	124	143	0.92
Transmembrane Helix	144	167	0.94
Non-Cytoplasmic	168	175	0.84
Transmembrane Helix	176	198	0.89
Cytoplasmic	199	205	0.84
Transmembrane Helix	206	225	0.94
Non-Cytoplasmic	226	240	0.86
Transmembrane Helix	241	261	0.94
Cytoplasmic	262	268	0.88
Transmembrane Helix	269	290	0.90
Non-Cytoplasmic	291	309	0.89
Transmembrane Helix	310	330	0.94
Cytoplasmic	331	345	0.89
Transmembrane Helix	346	370	0.86
Non-Cytoplasmic	371	383	0.80
Transmembrane Helix	384	408	0.82
Cytoplasmic	409	424	0.92
Transmembrane Helix	425	447	0.89
Non-Cytoplasmic	448	453	0.88
Transmembrane Helix	454	476	0.88
Cytoplasmic	477	499	0.90
Transmembrane Helix	500	518	0.95
Non-Cytoplasmic	519	534	0.83
Transmembrane Helix	535	556	0.92
Cytoplasmic	557	562	0.93
Transmembrane Helix	563	584	0.92
Non-Cytoplasmic	585	630	0.96
Transmembrane Helix	631	654	0.87
Cytoplasmic	655	686	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAFALGYIA LNRGEQINAL WIVVASVCIY LIAYRFYGLY IAKNVLAVDP TRMTPAVRHN  60
   61 DGLDYVPTDK KVLFGHHFAA IAGAGPLVGP VLAAQMGYLP GMIWLLAGVV LAGAVQDFMV 120
  121 LFVSTRRDGR SLGELVKEEM GPTAGVIALV ACFMIMVIIL AVLAMIVVKA LTHSPWGTYT 180
  181 VAFTIPLALF MGIYLRYLRP GRIGEVSVIG LVFLIFAIIS GGWVAESPTW APYFDFTGVQ 240
  241 LTWMLVGYGF VAAVLPVWLL LAPRDYLSTF LKIGTIVGLA VGILIMRPTL TMPALTKFVD 300
  301 GTGPVWTGNL FPFLFITIAC GAVSGFHALI SSGTTPKMLA NEGQACFIGY GGMLMESFVA 360
  361 IMALVSACII DPGVYFAMNS PMAVLAPAGT ADVVASAAQV VSSWGFSITP DTLNQIASEV 420
  421 GEQSIISRAG GAPTLAVGMA YILHGALGGM MDVAFWYHFA ILFEALFILT AVDAGTRAAR 480
  481 FMLQDLLGVV SPGLKRTDSL PANLLATALC VLAWGYFLHQ GVVDPLGGIN TLWPLFGIAN 540
  541 QMLAGMALML CAVVLFKMKR QRYAWVALVP TAWLLICTLT AGWQKAFSPD AKVGFLAIAN 600
  601 KFQAMIDSGN IPSQYTESQL AQLVFNNRLD AGLTIFFMVV VVVLALFSIK TALAALKDPK 660
  661 PTAKETPYEP MPENVEEIVA QAKGAH