YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|75194535
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.90
Transmembrane Helix	7	28	0.87
Non-Cytoplasmic	29	40	0.85
Transmembrane Helix	41	63	0.89
Cytoplasmic	64	77	0.88
Transmembrane Helix	78	100	0.90
Non-Cytoplasmic	101	131	0.95
Transmembrane Helix	132	153	0.89
Cytoplasmic	154	175	0.91
Transmembrane Helix	176	199	0.89
Non-Cytoplasmic	200	215	0.90
Transmembrane Helix	216	238	0.90
Cytoplasmic	239	247	0.86
Transmembrane Helix	248	270	0.85
Non-Cytoplasmic	271	306	0.90
Transmembrane Helix	307	326	0.93
Cytoplasmic	327	334	0.86
Transmembrane Helix	335	354	0.93
Non-Cytoplasmic	355	389	0.87
Transmembrane Helix	390	410	0.83
Cytoplasmic	411	434	0.77
Transmembrane Helix	435	456	0.90
Non-Cytoplasmic	457	462	0.77
Transmembrane Helix	463	482	0.94
Cytoplasmic	483	662	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFYTSAGLI LLFSLTTILF RDFSALWIGR TLDWVSKTFG WYYLLAATLY IVFVVCIACS  60
   61 RFGSVKLGPE QSKPEFSLLS WAAMLFAAGI GIDLMFFSVA EPVTQYMQPP EGAGQTIEAA 120
  121 RQAMVWTLFH YGLTGWSMYA LMGMALGYFS YRYNLPLTIR SALYPIFGKR INGPIGHSVD 180
  181 IAAVIGTIFG IATTLGIGVV QLNYGLSVLF DIPDSMAAKA ALIALSVIIA TISVTSGVDK 240
  241 GIRVLSELNV ALALGLILFV LFMGDTSFLL NALVLNVGDY VNRFMGMTLN SFAFDRPVEW 300
  301 MNNWTLFFWA WWVAWSPFVG LFLARISRGR TIRQFVLGTL IIPFTFTLLW LSVFGNSALY 360
  361 EIIHGGAAFA EEAMVHPERG FYSLLAQYPA FTFSASVATI TGLLFYVTSA DSGALVLGNF 420
  421 TSQLKDINSD APGWLRVFWS VAIGLLTLGM LMTNGISALQ NTTVIMGLPF SFVIFFVMAG 480
  481 LYKSLKVEDY RRESANRDTA PRPLGLQDRL SWKKRLSRLM NYPGTRYTKQ MMETVCYPAM 540
  541 EEVAQELRLR GAYVELKSLP PEEGQQLGHL DLLVHMGEEQ NFVYQIWPQQ YSVPGFTYRA 600
  601 RSGKSTYYRL ETFLLEGSQG NDLMDYSKEQ VITDILDQYE RHLNFIHLHR EAPGHSVMFP 660
  661 DA