YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|75179314
Protein type:	Globular with Signal Peptide
Type Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVNCVTASL MYYWSLPALA EQSSSEIKIV RDEYGMPHIY ANDTWHLFYG YVVAQDRLFQ  60
   61 MEMARRSTQG TVAEVLGKDF VKFDKDIRRN YWPDAIRAQI DALSPEDMSI LQGYADGMNA 120
  121 WIDKVNTNPE TLLPKQFNTF GFTPKRWEPF DVAMIFVGTM ANRFSDSTSE IDNLALLTAL 180
  181 KDKYGVSQGM AVFNQLKWLV NPSAPTTIAV QESSYPLKFN QQNSQTAALL PRYDLPAPML 240
  241 DRPAKGADGA LLALTAGKNR ETIAAQFAQG GANGLAGYPT TTNMWVIGKS KAQDAKAIMV 300
  301 NGPQFGWYAP AYTYGIGLHG AGYDVTGNTP FAYPGLVFGH NGVISWGSTA GFGDDVDIFA 360
  361 ERLSAEKPGY YLHNCKWVKM LSREETITVK NGQAETFTVW RTVHGNILQT DQTTQTAYAK 420
  421 SRAWDGKEVA SLLAWTHQMK AKNWQE

Type	Start	End	Confidence
Signal Peptide	1	20	0.78
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	446	0.99