YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|75177962
Protein type:	Globular with Signal Peptide
Type Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNYYKNATE ANGMKLTLKN LSMAIMMSTI VMGSSAMAAD SNEKIVIAHR GASGYLPEHT  60
   61 LPAKAMAYAQ GADYLEQDLV MTKDDHLVVL HDHYLDRVTD VADRFPDRAR KDGRYYAIDF 120
  121 TLDEIKSLKF TEGFDIENGK KVQTYPGRFP MGKSDFRVHT FEEEIEFVQG LNHSTGKNIG 180
  181 IYPEIKAPWF HHQEGKDIAA KTLEVLKKYG YTGKDDKVYL QCFDADELKR IKNELEPKMG 240
  241 MELNLVQLIA YTDWNETQQK QPDGSWVNYN YDWMFKPGAM KQVAEYADGI GPDYHMLIEE 300
  301 TSQPGNIKLT GMVQDAQQNK LVVHPYTVRS DKLPEYTPDV NQLYDALYNK AGVNGLFTDF 360
  361 PDKAVKFLNK E

Type	Start	End	Confidence
Signal Peptide	1	38	0.59
N-region	1	29
H-region	30	35
C-region	36	38
Cleavage Site	38	39
Non-Cytoplasmic	39	371	0.99